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    • Home
    • Philosophy
    • Research
    • Meet the Team
    • Rising Stars
    • Lab News
    • Publications
    • Join Us!
    • Contact
  • Home
  • Philosophy
  • Research
  • Meet the Team
  • Rising Stars
  • Lab News
  • Publications
  • Join Us!
  • Contact

Selected Publications

 L. Ashley Watson, Zoe Adelsheim, Mackenzie J. Carter, Grace T. Carter, Karen L. Jimenez-Reyes, Huijie Du, Ziqing Zhu, David B. Berry, Mia C. Paredez, Rania H. Palaniappan, John M. Augustine, Hiruy S. Meharena. Persistent and transient senescent cells contribute to brain-barrier development. Cell: 10.1016/j.cell.2026.05.022

Watson et. al., 2026 Cell (pdf)Download

Meharena, H.S., Marco, A., Dileep, V., Lockshin, E.R., Akatsu, G.Y., Mulalahoo, J., Watson, L.A., Ko, T.., Guerin, L.N., Abdurob, F., Rengarajan, S., Papanastasiou, M., Jaffe, J.D., & Tsai, L.-H. Down syndrome induced senescence disrupts the nuclear architecture of neural progenitors. Cell Stem Cell. (2021) https://www.cell.com/cell-stem-cell/fulltext/S1934-5909(21)00486-0

Meharena et. al., 2021 Cell Stem Cell (pdf)Download

Marco, A., Meharena, H.S., Dileep, V., Raju, R.M., Davila-Velderrain, J., Zhang, A.L., Adaikkan, C., Young, J.Z., Gao, F., Kellis, M., & Tsai, L.-H. (2020). Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble. Nat. Neurosci. 23, 1606-1617. https://www.nature.com/articles/s41593-020-00717-0

Marco et. al., Nat Neuro, 2020 (pdf)Download

 Morshed, N., Ralvenius, W.T., Nott, A., Watson, L.A., Rosriguez, F.H., Akay, L.A., Joughin, B.A., Pao, P.C., Penney, J.,  LaRocque, L., Mastroeni, S., Tsai, L.-H., & White, F.M. (2020). Phosphoproteomics identifies microglial  Siglec-F inflammatory response during neurodegeneration. Mol. Syst. Biol. 16, e9819. 

Morshed et. al., Mol Syst Biol, 2020 (pdf)Download

 Pao, P.C., Patnaik, D., Watson, L.A., Gao, F., Pan, L., Wang, J., Adaikkan, C., Penney, J., Cam, H.P., Huang, W.C.,  Pantano, L., Lee, A., Nott, A., Phan, T.X., Gjoneska, E., Elmsaouri, S., Haggarty, S.J., & Tsai, L.-H. (2020).  HDAC1 modulates OGG1-initiated oxidative DNA damage repair in the aging brain and Alzheimer’s  disease. Nat. Commun. 11, 2484. 

Pao et. al., Nat Comm, 2020 (pdf)Download

 Canter, R.G., Huang, W.C., Choi, H., Wang, J., Watson, L.A., Yao, C.G., Abdurrob, F., Bousleiman, S.M., Young, J.Z.,  Bennett, D.A., Delalle, I., Chung, K., & Tsai, L.-H. (2019). 3D mapping reveals network-specific amyloid  progression and subcortical susceptibility in mice. Commun. Biol. 2, 360.

Canter et. al., Comm Biol, 2019 (pdf)Download

Taylor, S.S., Meharena, H.S., & Kornev, A.P. (2019). Evolution of a dynamic molecular switch. IUBMB Life 71, 672-684.

Taylor et. al., IUBMB Life, 2019 (pdf)Download

Elbert, A., Vogt, D., Watson, L.A., Levy, M., Jiang, Y., Brûlé, E., Rowland, M.E., Rubenstein, J., & Bérubé, N.G. (2019). CTCF governs the identity and migration of MGE-derived cortical interneurons. J. Neurosci. 39, 177-192.

Elbert et. al., J. Neurosci., 2019 (pdf)Download

 Seo, J., Kritskiy, O., Watson, L.A., Barker, S.J., Dey, D., Raja, W., Lin, Y.-T., Ko, T., Cho, S., Penney, J., Silva, M.C.,  Sheridan, S., Lucente, D., Gusella, J., Dickerson, B., Haggarty, S.J., & Tsai, L.-H. (2017). Inhibition of  p25/Cdk5 attenuates tauopathy in mouse and iPSC models of frontotemporal dementia. J. Neurosci. 37, 9917-9924.  

Seo et. al., J Neuro, 2017 (pdf)Download

Watson, L.A. & Tsai, L.-H. (2017). Molecular biology: Local metabolites linked to memory. Nature 546, 361-362.

Watson & Tsai, Nature, 2017 (pdf)Download

Watson, L.A. & Tsai, L.-H. (2016). In the loop: how chromatin topology links genome structure to function  in mechanisms underlying learning and memory. Curr. Opin. Neurobiol. 43, 48-55. 

Watson & Tsai, Curr Opin Neurobiol, 2017 (pdf)Download

 Durak, O., Gao, F., Kaeser-Woo, Y.J., Rueda, R., Martorel, A.J., Nott, A., Liu, C.Y., Watson, L.A., & Tsai, L.-H. (2016). Chd8 mediates cortical neurogenesis through transcriptional regulation of cell cycle and Wnt  signalling genes. Nat. Neurosci. 19, 1477-1488. 

Durak et. al., Nat Neuro, 2016 (pdf)Download

Meharena, H.S., Fan, X., Ahuja, L.G., Keshwani, M.M., McClendon, C.L., N., Adams, J.A., & Taylor, S.S. (2016). Decoding the interactions regulating the active state mechanics of eukaryotic protein kinases. PLoS Biol. 2016 Nov 30;14(11):e200012

Meharena et. al., PLoS Biol, 2016 (pdf)Download

Watson, L.A., Goldberg, H., & Bérubé, N.G. (2015). Emerging roles of ATRX in cancer. Epigenomics. 7,  1365-78. 

Watson et. al., Epigenomics, 2015 (pdf)Download

Hu, J., Ahuja, L.G., Meharena, H.S., Kannan, N., Kornev, A.P., Taylor, S.S., & Shaw, A.S. (2015). Kinase regulation by hydrophobic spine assembly in cancer. Mol. Cell Biol. 35, 264-276. 

Hu et. al., Mol. Cell Biol., 2015 (pdf)Download

 Ritchie, K., Watson, L.A., Davidson, B., Jiang, Y., & Bérubé, N.G. (2014). ATRX is required for maintenance of the neuroprogenitor cell pool in the embryonic mouse brain. Biol. Open, 3, 1158-1163. 

Ritchie et. al., Biol. Open, 2014 (pdf)Download

 Watson, L.A., Wang, X., Elbert, A., Kernohan, K., Galjart, N., & Bérubé, N.G. (2014). Dual effect of CTCF loss on neuroprogenitor differentiation and survival. J. Neurosci. 34, 2860-2870.  

Watson et. al., J. Neurosci., 2014 (pdf)Download

 Solomon, L.A., Russell, B.A., Watson, L.A., Beier, F., & Bérubé, N.G. (2013). Targeted loss of the ATR-X syndrome protein in the limb mesenchyme of mice causes brachydactyly. Hum. Mol. Genet. 22, 5015-5025. 

Solomon et. al., Hum. Mol. Genet., 2013 (pdf)Download

Meharena, H.S., Chang, P., Keshwani, M.M., Oruganty, K., Nene, A.K., Kannan, N., Taylor, S.S., & Kornev, A.P. (2013). Deciphering the structural basis of eukaryotic protein kinase regulation. PLoS Biol 11, e100168.

Meharena et. al., PLoS Biol, 2013 (pdf)Download

 Hu, J., Stites, E.C., Yu, H., Germino, E.A., Meharena, H.S., Stork, P.J., Kornev, A.P., Taylor, S.S., & Shaw, A.S. (2013). Allosteric activation of functionally asymmetric RAF kinase dimers. Cell 154, 1036-1046. 

Hu et. al., Cell, 2013 (pdf)Download

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